PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC006970.50
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 196aa    MW: 22460.8 Da    PI: 9.6418
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC006970.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.3e-1285191296
                   EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE- CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkld 85 
                   +k lt+sd + ++rl + ++f+++h           + ++ ++ +++++d +   + ++ + ++ +sg+yvl++GW keFvk  gL +gD v ++  
  EcC006970.50  85 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmneetvrQVESSKGADVIVRDMDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAVGDEVGIYW- 180
                   5889************************98888877444457788999996666778888888*************999***********999995. PP

                   SS.SEE..EEEE CS
            B3  86 gr.sefelvvkv 96 
                    + s  ++++++
  EcC006970.50 181 -EpSASKFHFSL 191
                   .44555457666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-1583192IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.006184195IPR003340B3 DNA binding domain
CDDcd100177.94E-1884192No hitNo description
Gene3DG3DSA:2.40.330.101.3E-1585192IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-986190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
VVASREFFLL VPDQNTKEVG HPRQEIVPAQ LKRKSMASIA DPETFIVEKT KKYKRTQRGK  60
EEASGCDAEE VSTELTLLFD PYKIKKRLTQ SDLGHLSRLL IGRDFVKSHF LRWMNEETVR  120
QVESSKGADV IVRDMDTCSE HRLVFVFWAS SGSYVLKGGW IKEFVKRRGL AVGDEVGIYW  180
EPSASKFHFS LLHKAN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041071.11e-138PREDICTED: uncharacterized protein LOC104429979
TrEMBLA0A059C5A21e-140A0A059C5A2_EUCGR; Uncharacterized protein
STRINGPOPTR_0003s19110.15e-35(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.12e-30B3 family protein